| Protein ZmHMG4 | |
|---|---|
|
ZmHMG4 is a protein in the HMG family.
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| Information | |
| Coreg Name: | ZmHMG4 |
| Species: | Maize |
| Coreg Family: | HMG |
| Gene Name(Synonym): | HMG4 |
| Uniprot ID: | A0A1D6PDQ1 |
| Subgenome: | 1 |
Protein ZmHMG4
ZmHMG4 is a protein in the HMG family. NOTE the "Uniprot ID" shown on the right is a placeholder for testing. The interactive structure shown is based on that id.
Protein-DNA Interactions
Meme Logos for Maize v4 Gene IDs
| Gene ID | Type | MEME Logo | Sequence | FIMO | Position |
|---|---|---|---|---|---|
| Zm00001d043946 | DAPseq |  |
sequence | fimo | position |
| Zm00001d043946 | DAPseq |  |
sequence | fimo | position |
| Zm00001d043946 | ChIPseq |  |
sequence | fimo | position |
| Zm00001d043946 | PChIPseq |  |
sequence | fimo | position |
Interactions where ZmHMG4 is the regulator
Interactions where ZmHMG4 is the target
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Zm00001d043946_T001 from maize genome v4
Amino Acid Sequence
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MKTRSQTSPKPLKTVAMAPRPSSTKRKPRPKPAGKGDPRAPKKPPTAFFYFMEDFRKIYKQEKPSVKSMQEIGKACGEKW
NTMTFEVSIFSLQPDSRVPLVIYHLMLPADEKVKYYDIATEKRAEFEKAMIEYNKKKES
MKTRSQTSPKPLKTVAMAPRPSSTKRKPRPKPAGKGDPRAPKKPPTAFFYFMEDFRKIYKQEKPSVKSMQEIGKACGEKW
NTMTFEVSIFSLQPDSRVPLVIYHLMLPADEKVKYYDIATEKRAEFEKAMIEYNKKKES
| Secondary Structure Color Code | |
|---|---|
| BEND | region with high backbone curvature without specific hydrogen bonding |
| HELX_LH_PP_P | left-handed polyproline helix |
| HELX_RH_3T_P | right-handed 3-10 helix |
| HELX_RH_AL_P | right-handed alpha helix |
| HELX_RH_PI_P | right-handed pi helix |
| STRN | beta strand |
| TURN_TY1_P | type I turn |
| UNDETERMINED | no data available |
Nucleotide Sequence
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ACCATGGGCTGGTGTGTCACACTTC...
ACCATGGGCTGGTGTGTCACACTTCCGGCCCACGAGAGGCGGATGCTCAGCGCCTCAGCGGCCAGATCGTCTTCCCTTCCCCCCTACCCTGTGCGTGTCTGCTCCCTCTCCTCTGGCTGCCGCTCTCCACAGTCCTCGGGCTCCAAGCCTTGCGTAAACCCCGACCCCCACGCGCATAGATGAAGACTAGGTCGCAGACGTCGCCGAAGCCTCTCAAGACGGTGGCGATGGCTCCCAGGCCGAGCAGCACCAAGCGGAAGCCGAGGCCCAAGCCGGCGGGGAAGGGCGACCCCCGCGCACCCAAGAAGCCACCCACCGCCTTCTTCTACTTCATGGAGGATTTTCGCAAGATCTATAAGCAAGAAAAACCAAGTGTAAAATCAATGCAGGAAATAGGGAAGGCATGTGGCGAAAAATGGAATACAATGACATTTGAGGTCAGCATTTTCTCCTTGCAGCCTGATAGTCGTGTTCCATTAGTTATTTACCACCTTATGCTGCCTGCTGATGAAAAGGTCAAGTATTATGATATAGCTACTGAGAAACGTGCAGAATTTGAGAAGGCGATGATTGAATATAACAAGAAAAAGGAAAGCTGAACATTTGTCTGTTCCAAATTCCCGATGGTTCACTGTAACTGGATGAATCAATCAGCTGTATATTACAGAACTGTGATTTTTAGTGGAATTTATAAATACCACTAGTTGGAACCGTCAGCTCACGCAGATATGTATCTTTTGTAGTCGACTTGCACATTTTGATGACACCGAGTCTTCTACCCGGTGTTTTTCATCTGGAGATAATTTGTGTTTCGTGCTAACTGCTCGTTAAATTGCTTATTATAGAGTTGTATGTATGATTGT
GRMZM2G024247_T01 from maize genome v3
Amino Acid Sequence
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MKTRSQTSPKPLKTVAMAPRPSSTKRKPRPKPAGKGDPRAPKKPPTAFFYFMEDFRKIYKQEKPSVKSMQEIGKACGEKW
NTMTFEEKVKYYDIATEKRAEFEKAMIEYNKKKES
Nucleotide Sequence
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CTCTCCTCTGGCTGCCGCTCTCCAC...
CTCTCCTCTGGCTGCCGCTCTCCACAGTCCTCGGGCTCCAAGCCTTGCGTAAACCCCGACCCCCACGCGCATAGATGAAGACTAGGTCGCAGACGTCGCCGAAGCCTCTCAAGACGGTGGCGATGGCTCCCAGGCCGAGCAGCACCAAGCGGAAGCCGAGGCCCAAGCCGGCGGGGAAGGGCGACCCCCGCGCACCCAAGAAGCCACCCACCGCCTTCTTCTACTTCATGGAGGATTTTCGCAAGATCTATAAGCAAGAAAAACCAAGTGTAAAATCAATGCAGGAAATAGGGAAGGCATGTGGCGAAAAATGGAATACAATGACATTTGAGGAAAAGGTCAAGTATTATGATATAGCTACTGAGAAACGTGCAGAATTTGAGAAGGCGATGATTGAATATAACAAGAAAAAGGAAAGCTGAACATTTGTCTGTTCCAAATTCCCGATGGTTCACTGTAACTGGATGAATCAATCAGCTGTATATTACAGAACTGTGATTTTTAGTGGAATTTATAAATACCACTAGTTGGAACCGTCAGCTCACGCAGATATGTATCTTTTGTAGTCGACTTGCACATTTTGATGACACCGAGTCTTCTACCCGGTGTTTTTCATCTGGAGATAATTTGTGTTTCGTGCTAACTGCTCGTTAAATTGCTTATTA
GRMZM2G024247_T02 from maize genome v3
Amino Acid Sequence
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MKTRSQTSPKPLKTVAMAPRPSSTKRKPRPKPAGKGDPRAPKKPPTAFFYFMEDFRKIYKQEKPSVKSMQEIGKACGEKW
NTMTFEVSIFSLQPDSRVPLVIYHLMLPADVNCLIPQW
Nucleotide Sequence
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CTCTCCTCTGGCTGCCGCTCTCCAC...
CTCTCCTCTGGCTGCCGCTCTCCACAGTCCTCGGGCTCCAAGCCTTGCGTAAACCCCGACCCCCACGCGCATAGATGAAGACTAGGTCGCAGACGTCGCCGAAGCCTCTCAAGACGGTGGCGATGGCTCCCAGGCCGAGCAGCACCAAGCGGAAGCCGAGGCCCAAGCCGGCGGGGAAGGGCGACCCCCGCGCACCCAAGAAGCCACCCACCGCCTTCTTCTACTTCATGGAGGATTTTCGCAAGATCTATAAGCAAGAAAAACCAAGTGTAAAATCAATGCAGGAAATAGGGAAGGCATGTGGCGAAAAATGGAATACAATGACATTTGAGGTCAGCATTTTCTCCTTGCAGCCTGATAGTCGTGTTCCATTAGTTATTTACCACCTTATGCTGCCTGCTGATGTAAATTGCTTGATTCCACAATGGTGATGCAAATTTGACCACGGTGCACTGGATATGCAGTTTGGGTTTTGCCTATACTTCTTTTTTTTCCTGATCAACCATTTTATGTGGGAAACAATATATAGGGATCAGAAGGTCTTTATATTATGCTTTATTTGGTTAATGTCCAGTTCAAACTTCAAAGAACATGAGCTATTGCCACCCTTTTATTCTAATGGTGAGGAAGCGATTTCCCTTGGGCCCATGGCCCATTTCTTATTTAAGTTCTTTCACAAGTTTATACTTTAGAGAGTTTGAAGGGACAATTGGCATGGCTGTGTTAACTATGAATTTTTCTGACCTACATGCTCAAAAAGTCAAAATGAAGTTTATGAGTACTGTAGCTTTGGTTCATTTGGATTATTCTACATCAGTGCACATTTGCTATTATTTCGTATGTTACATTAAGTGTATAGTTGCTACTTACTGTCCCAGTATTTGAGCTCCCCACTTATGAGCTGCTTTAGGGGTGTTCACTGACAGTTTTACCAGTTTGATCAAAGCAGATCAATACTCATAATTAACTTGGTGTGTACGCTGCTCTGTCGGTACTGGGCAGCTAGGTTGCTTAGCATGTATGTTTGAATGGTTTCAACCGTTTTGGAACATCTTCACCCCTAGTACATCTTCACTCAACCTTGGTTTGGTGCCCACGGGCCATTCTAGCTACTCTTACTGTGCATGGTAGCAAACGATTCGAAACACGAAAACAGTAGGATTTTTGCAAATATAAAGATAAACTATGGATTCTTTAAATTGTAAATACTGCACGCTTGTGCCTTCTATATGATTATGAAATTTGACTTATAGAAACAATAGTTTTCACTTAATTCATTTCACAGGAAAAGGTCAAGTATTATGATATAGCTACTGAGAAACGTGCAGAATTTGAGAAGGCGATGATTGAATATAACAAGAAAAAGGAAAGCTGAACATTTGTCTGTTCCAAATTCCCGATGGTTCACTGTAACTGGATGAATCAATCAGCTGTATATTACAGAACTGTGATTTTTAGTGGAATTTATAAATACCACTAGTTGGAACCGTCAGCTCACGCAGATATGTATCTTTTGTAGTCGACTTGCACATTTTGATGACACCGAGTCTTCTACCCGGTGTTTTTCATCTGGAGATAATTTGTGTTTCGTGCTAACTGCTCGTTAAATTGCTTATTA
Zm00001d043946_T002 from maize genome v4
Amino Acid Sequence
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MKTRSQTSPKPLKTVAMAPRPSSTKRKPRPKPAGKGDPRAPKKPPTAFFYFMEDFRKIYKQEKPSVKSMQEIGKACGEKW
NTMTFEEKVKYYDIATEKRAEFEKAMIEYNKKKES
Nucleotide Sequence
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ACCATGGGCTGGTGTGTCACACTTC...
ACCATGGGCTGGTGTGTCACACTTCCGGCCCACGAGAGGCGGATGCTCAGCGCCTCAGCGGCCAGATCGTCTTCCCTTCCCCCCTACCCTGTGCGTGTCTGCTCCCTCTCCTCTGGCTGCCGCTCTCCACAGTCCTCGGGCTCCAAGCCTTGCGTAAACCCCGACCCCCACGCGCATAGATGAAGACTAGGTCGCAGACGTCGCCGAAGCCTCTCAAGACGGTGGCGATGGCTCCCAGGCCGAGCAGCACCAAGCGGAAGCCGAGGCCCAAGCCGGCGGGGAAGGGCGACCCCCGCGCACCCAAGAAGCCACCCACCGCCTTCTTCTACTTCATGGAGGATTTTCGCAAGATCTATAAGCAAGAAAAACCAAGTGTAAAATCAATGCAGGAAATAGGGAAGGCATGTGGCGAAAAATGGAATACAATGACATTTGAGGAAAAGGTCAAGTATTATGATATAGCTACTGAGAAACGTGCAGAATTTGAGAAGGCGATGATTGAATATAACAAGAAAAAGGAAAGCTGAACATTTGTCTGTTCCAAATTCCCGATGGTTCACTGTAACTGGATGAATCAATCAGCTGTATATTACAGAACTGTGATTTTTAGTGGAATTTATAAATACCACTAGTTGGAACCGTCAGCTCACGCAGATATGTATCTTTTGTAGTCGACTTGCACATTTTGATGACACCGAGTCTTCTACCCGGTGTTTTTCATCTGGAGATAATTTGTGTTTCGTGCTAACTGCTCGTTAAATTGCTTATTATAGAGTTGTATGTATGATTGT
Zm00001eb157450_T001 from maize genome v5
Amino Acid Sequence
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MKTRSQTSPKPLKTVAMAPRPSSTKRKPRPKPAGKGDPRAPKKPPTAFFYFMEDFRKIYKQEKPSVKSMQEIGKACGEKW
NTMTFEEKVKYYDIATEKRAEFEKAMIEYNKKKES
Nucleotide Sequence
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ACCATGGGCTGGTGTGTCACACTTC...
ACCATGGGCTGGTGTGTCACACTTCCGGCCCACGAGAGGCGGATGCTCAGCGCCTCAGCGGCCAGATCGTCTTCCCTTCCCCCCTACCCTGTGCGTGTCTGCTCCCTCTCCTCTGGCTGCCGCTCTCCACAGTCCTCGGGCTCCAAGCCTTGCGTAAACCCCGACCCCCACGCGCATAGATGAAGACTAGGTCGCAGACGTCGCCGAAGCCTCTCAAGACGGTGGCGATGGCTCCCAGGCCGAGCAGCACCAAGCGGAAGCCGAGGCCCAAGCCGGCGGGGAAGGGCGACCCCCGCGCACCCAAGAAGCCACCCACCGCCTTCTTCTACTTCATGGAGGATTTTCGCAAGATCTATAAGCAAGAAAAACCAAGTGTAAAATCAATGCAGGAAATAGGGAAGGCATGTGGCGAAAAATGGAATACAATGACATTTGAGGAAAAGGTCAAGTATTATGATATAGCTACTGAGAAACGTGCAGAATTTGAGAAGGCGATGATTGAATATAACAAGAAAAAGGAAAGCTGAACATTTGTCTGTTCCAAATTCCCGATGGTTCACTGTAACTGGATGAATCAATCAGCTGTATATTACAGAACTGTGATTTTTAGTGGAATTTATAAATACCACTAGTTGGAACCGTCAGCTCACGCAGATATGTATCTTTTGTAGTCGACTTGCACATTTTGATGACACCGAGTCTTCTACCCGGTGTTTTTCATCTGGAGATAATTTGTGTTTCGTGCTAACTGCTCGTTAAATTGCTTATTATAGAGTTGTATGTATGATTGTGT
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